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Matrix Science mascot engine version 2.2
Mascot Engine Version 2.2, supplied by Matrix Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mascot+version+2%2E2/mascot+search+algorithm/pmc09313479__ADVS___9___2200856___s004-216-6-8
Average 90 stars, based on 1 article reviews
mascot engine version 2.2 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Isolation:

Article Title: Integrated transcriptomics and proteomics assay identifies the role of FCGR1A in maintaining sperm fertilization capacity during semen cryopreservation in sheep
Article Snippet: The MS raw data for each sample were thereafter searched using Mascot version 2.2 (Matrix Science, London, United Kingdom) embedded into Proteome Discoverer 1.4 software to facilitate both identification and quantitation analysis.

Article Title: Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain
Article Snippet: MASCOT , Matrix Science , Version 2.2.

Article Title: Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair
Article Snippet: The mass spectrometry raw data were identified and quantitatively analyzed using Mascot version 2.2 (Matrix Science, London, UK) and Proteome Discoverer version 1.4 (Thermo Fisher Scientific, Waltham, MA, USA).

Article Title: E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of DNMT1
Article Snippet: Protein identification and iTRAQ were conducted using Mascot version 2.2 (Matrix Science, USA) and Proteome Discoverer software version 1.4 (Thermo Scientific, USA) based on the UniProt Human Database.

Article Title: Human alcohol dehydrogenase 1 is an acceptor protein for polyADP-ribosylation
Article Snippet: The data were analyzed using LCMS solution (Shimazu Co.) and MASCOT Version 2.2 (Matrix Science K.K., Tokyo) to find out proper proteins from data base from all organism by comparing with NCBInr and SwissProt.

Article Title: Oxidative Stress Promotes Liver Cancer Metastasis via RNF25‐Mediated E‐Cadherin Protein Degradation
Article Snippet: MS/MS spectra were searched using MASCOT (Matrix Science, London, UK; version 2.2) against a nonredundant International Protein Index Arabidopsis sequence database v3.85 (released in September 2011; 39 679 sequences) from the European Bioinformatics Institute ( http://www.ebi.ac.uk/ ).

Article Title: iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity.
Article Snippet: Competent endometrial receptivity is a prerequisite for successful embryo implantation.. Identification of novel key molecules involved in endometrial receptivity is essential to better interpret human implantation and improve pregnancy rates in assisted reproduction treatment.. Isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomics was performed to profile the proteomes of the prereceptive (luteinizing hormone [LH] + 2, n = 4) and receptive (LH + 7, n = 4) endometrial tissues.

Article Title: Hormone-mediated disassembly and inactivation of a plant E3 ubiquitin ligase complex.
Article Snippet: For the protocols of proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and mass spectrometry-based protein homology identification based on the TAIR10 genomic database, we referred to.45,56 For protein identification upon MS analysis the GPS explorer v3.6 (AB SCIEX) software package combined with search engine Mascot version 2.2 (Matrix Science) or Proteome Discoverer Software combined with search engine Sequest (Thermo) were used.

Software:

Article Title: Integrated transcriptomics and proteomics assay identifies the role of FCGR1A in maintaining sperm fertilization capacity during semen cryopreservation in sheep
Article Snippet: The MS raw data for each sample were thereafter searched using Mascot version 2.2 (Matrix Science, London, United Kingdom) embedded into Proteome Discoverer 1.4 software to facilitate both identification and quantitation analysis.

Article Title: Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain
Article Snippet: MASCOT , Matrix Science , Version 2.2.

Article Title: Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair
Article Snippet: The mass spectrometry raw data were identified and quantitatively analyzed using Mascot version 2.2 (Matrix Science, London, UK) and Proteome Discoverer version 1.4 (Thermo Fisher Scientific, Waltham, MA, USA).

Article Title: E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of DNMT1
Article Snippet: Protein identification and iTRAQ were conducted using Mascot version 2.2 (Matrix Science, USA) and Proteome Discoverer software version 1.4 (Thermo Scientific, USA) based on the UniProt Human Database.

Article Title: Human alcohol dehydrogenase 1 is an acceptor protein for polyADP-ribosylation
Article Snippet: The data were analyzed using LCMS solution (Shimazu Co.) and MASCOT Version 2.2 (Matrix Science K.K., Tokyo) to find out proper proteins from data base from all organism by comparing with NCBInr and SwissProt.

Article Title: Oxidative Stress Promotes Liver Cancer Metastasis via RNF25‐Mediated E‐Cadherin Protein Degradation
Article Snippet: MS/MS spectra were searched using MASCOT (Matrix Science, London, UK; version 2.2) against a nonredundant International Protein Index Arabidopsis sequence database v3.85 (released in September 2011; 39 679 sequences) from the European Bioinformatics Institute ( http://www.ebi.ac.uk/ ).

Article Title: iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity.
Article Snippet: Competent endometrial receptivity is a prerequisite for successful embryo implantation.. Identification of novel key molecules involved in endometrial receptivity is essential to better interpret human implantation and improve pregnancy rates in assisted reproduction treatment.. Isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomics was performed to profile the proteomes of the prereceptive (luteinizing hormone [LH] + 2, n = 4) and receptive (LH + 7, n = 4) endometrial tissues.

Article Title: Hormone-mediated disassembly and inactivation of a plant E3 ubiquitin ligase complex.
Article Snippet: For the protocols of proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and mass spectrometry-based protein homology identification based on the TAIR10 genomic database, we referred to.45,56 For protein identification upon MS analysis the GPS explorer v3.6 (AB SCIEX) software package combined with search engine Mascot version 2.2 (Matrix Science) or Proteome Discoverer Software combined with search engine Sequest (Thermo) were used.

Tandem Mass Spectroscopy:

Article Title: Integrated transcriptomics and proteomics assay identifies the role of FCGR1A in maintaining sperm fertilization capacity during semen cryopreservation in sheep
Article Snippet: The MS raw data for each sample were thereafter searched using Mascot version 2.2 (Matrix Science, London, United Kingdom) embedded into Proteome Discoverer 1.4 software to facilitate both identification and quantitation analysis.

Article Title: Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain
Article Snippet: MASCOT , Matrix Science , Version 2.2.

Article Title: Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair
Article Snippet: The mass spectrometry raw data were identified and quantitatively analyzed using Mascot version 2.2 (Matrix Science, London, UK) and Proteome Discoverer version 1.4 (Thermo Fisher Scientific, Waltham, MA, USA).

Article Title: E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of DNMT1
Article Snippet: Protein identification and iTRAQ were conducted using Mascot version 2.2 (Matrix Science, USA) and Proteome Discoverer software version 1.4 (Thermo Scientific, USA) based on the UniProt Human Database.

Article Title: Human alcohol dehydrogenase 1 is an acceptor protein for polyADP-ribosylation
Article Snippet: The data were analyzed using LCMS solution (Shimazu Co.) and MASCOT Version 2.2 (Matrix Science K.K., Tokyo) to find out proper proteins from data base from all organism by comparing with NCBInr and SwissProt.

Article Title: Oxidative Stress Promotes Liver Cancer Metastasis via RNF25‐Mediated E‐Cadherin Protein Degradation
Article Snippet: MS/MS spectra were searched using MASCOT (Matrix Science, London, UK; version 2.2) against a nonredundant International Protein Index Arabidopsis sequence database v3.85 (released in September 2011; 39 679 sequences) from the European Bioinformatics Institute ( http://www.ebi.ac.uk/ ).

Article Title: iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity.
Article Snippet: Competent endometrial receptivity is a prerequisite for successful embryo implantation.. Identification of novel key molecules involved in endometrial receptivity is essential to better interpret human implantation and improve pregnancy rates in assisted reproduction treatment.. Isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomics was performed to profile the proteomes of the prereceptive (luteinizing hormone [LH] + 2, n = 4) and receptive (LH + 7, n = 4) endometrial tissues.

Article Title: Hormone-mediated disassembly and inactivation of a plant E3 ubiquitin ligase complex.
Article Snippet: For the protocols of proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and mass spectrometry-based protein homology identification based on the TAIR10 genomic database, we referred to.45,56 For protein identification upon MS analysis the GPS explorer v3.6 (AB SCIEX) software package combined with search engine Mascot version 2.2 (Matrix Science) or Proteome Discoverer Software combined with search engine Sequest (Thermo) were used.

Sequencing:

Article Title: Integrated transcriptomics and proteomics assay identifies the role of FCGR1A in maintaining sperm fertilization capacity during semen cryopreservation in sheep
Article Snippet: The MS raw data for each sample were thereafter searched using Mascot version 2.2 (Matrix Science, London, United Kingdom) embedded into Proteome Discoverer 1.4 software to facilitate both identification and quantitation analysis.

Article Title: Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain
Article Snippet: MASCOT , Matrix Science , Version 2.2.

Article Title: Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair
Article Snippet: The mass spectrometry raw data were identified and quantitatively analyzed using Mascot version 2.2 (Matrix Science, London, UK) and Proteome Discoverer version 1.4 (Thermo Fisher Scientific, Waltham, MA, USA).

Article Title: E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of DNMT1
Article Snippet: Protein identification and iTRAQ were conducted using Mascot version 2.2 (Matrix Science, USA) and Proteome Discoverer software version 1.4 (Thermo Scientific, USA) based on the UniProt Human Database.

Article Title: Human alcohol dehydrogenase 1 is an acceptor protein for polyADP-ribosylation
Article Snippet: The data were analyzed using LCMS solution (Shimazu Co.) and MASCOT Version 2.2 (Matrix Science K.K., Tokyo) to find out proper proteins from data base from all organism by comparing with NCBInr and SwissProt.

Article Title: Oxidative Stress Promotes Liver Cancer Metastasis via RNF25‐Mediated E‐Cadherin Protein Degradation
Article Snippet: MS/MS spectra were searched using MASCOT (Matrix Science, London, UK; version 2.2) against a nonredundant International Protein Index Arabidopsis sequence database v3.85 (released in September 2011; 39 679 sequences) from the European Bioinformatics Institute ( http://www.ebi.ac.uk/ ).

Article Title: iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity.
Article Snippet: Competent endometrial receptivity is a prerequisite for successful embryo implantation.. Identification of novel key molecules involved in endometrial receptivity is essential to better interpret human implantation and improve pregnancy rates in assisted reproduction treatment.. Isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomics was performed to profile the proteomes of the prereceptive (luteinizing hormone [LH] + 2, n = 4) and receptive (LH + 7, n = 4) endometrial tissues.

Article Title: Hormone-mediated disassembly and inactivation of a plant E3 ubiquitin ligase complex.
Article Snippet: For the protocols of proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and mass spectrometry-based protein homology identification based on the TAIR10 genomic database, we referred to.45,56 For protein identification upon MS analysis the GPS explorer v3.6 (AB SCIEX) software package combined with search engine Mascot version 2.2 (Matrix Science) or Proteome Discoverer Software combined with search engine Sequest (Thermo) were used.

Quantitation Assay:

Article Title: Integrated transcriptomics and proteomics assay identifies the role of FCGR1A in maintaining sperm fertilization capacity during semen cryopreservation in sheep
Article Snippet: The MS raw data for each sample were thereafter searched using Mascot version 2.2 (Matrix Science, London, United Kingdom) embedded into Proteome Discoverer 1.4 software to facilitate both identification and quantitation analysis.

Article Title: Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain
Article Snippet: MASCOT , Matrix Science , Version 2.2.

Article Title: Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair
Article Snippet: The mass spectrometry raw data were identified and quantitatively analyzed using Mascot version 2.2 (Matrix Science, London, UK) and Proteome Discoverer version 1.4 (Thermo Fisher Scientific, Waltham, MA, USA).

Article Title: E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of DNMT1
Article Snippet: Protein identification and iTRAQ were conducted using Mascot version 2.2 (Matrix Science, USA) and Proteome Discoverer software version 1.4 (Thermo Scientific, USA) based on the UniProt Human Database.

Article Title: Human alcohol dehydrogenase 1 is an acceptor protein for polyADP-ribosylation
Article Snippet: The data were analyzed using LCMS solution (Shimazu Co.) and MASCOT Version 2.2 (Matrix Science K.K., Tokyo) to find out proper proteins from data base from all organism by comparing with NCBInr and SwissProt.

Article Title: Oxidative Stress Promotes Liver Cancer Metastasis via RNF25‐Mediated E‐Cadherin Protein Degradation
Article Snippet: MS/MS spectra were searched using MASCOT (Matrix Science, London, UK; version 2.2) against a nonredundant International Protein Index Arabidopsis sequence database v3.85 (released in September 2011; 39 679 sequences) from the European Bioinformatics Institute ( http://www.ebi.ac.uk/ ).

Article Title: iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity.
Article Snippet: Competent endometrial receptivity is a prerequisite for successful embryo implantation.. Identification of novel key molecules involved in endometrial receptivity is essential to better interpret human implantation and improve pregnancy rates in assisted reproduction treatment.. Isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomics was performed to profile the proteomes of the prereceptive (luteinizing hormone [LH] + 2, n = 4) and receptive (LH + 7, n = 4) endometrial tissues.

Article Title: Hormone-mediated disassembly and inactivation of a plant E3 ubiquitin ligase complex.
Article Snippet: For the protocols of proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and mass spectrometry-based protein homology identification based on the TAIR10 genomic database, we referred to.45,56 For protein identification upon MS analysis the GPS explorer v3.6 (AB SCIEX) software package combined with search engine Mascot version 2.2 (Matrix Science) or Proteome Discoverer Software combined with search engine Sequest (Thermo) were used.

Multiplex sample analysis:

Article Title: Integrated transcriptomics and proteomics assay identifies the role of FCGR1A in maintaining sperm fertilization capacity during semen cryopreservation in sheep
Article Snippet: The MS raw data for each sample were thereafter searched using Mascot version 2.2 (Matrix Science, London, United Kingdom) embedded into Proteome Discoverer 1.4 software to facilitate both identification and quantitation analysis.

Article Title: Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain
Article Snippet: MASCOT , Matrix Science , Version 2.2.

Article Title: Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair
Article Snippet: The mass spectrometry raw data were identified and quantitatively analyzed using Mascot version 2.2 (Matrix Science, London, UK) and Proteome Discoverer version 1.4 (Thermo Fisher Scientific, Waltham, MA, USA).

Article Title: E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of DNMT1
Article Snippet: Protein identification and iTRAQ were conducted using Mascot version 2.2 (Matrix Science, USA) and Proteome Discoverer software version 1.4 (Thermo Scientific, USA) based on the UniProt Human Database.

Article Title: Human alcohol dehydrogenase 1 is an acceptor protein for polyADP-ribosylation
Article Snippet: The data were analyzed using LCMS solution (Shimazu Co.) and MASCOT Version 2.2 (Matrix Science K.K., Tokyo) to find out proper proteins from data base from all organism by comparing with NCBInr and SwissProt.

Article Title: Oxidative Stress Promotes Liver Cancer Metastasis via RNF25‐Mediated E‐Cadherin Protein Degradation
Article Snippet: MS/MS spectra were searched using MASCOT (Matrix Science, London, UK; version 2.2) against a nonredundant International Protein Index Arabidopsis sequence database v3.85 (released in September 2011; 39 679 sequences) from the European Bioinformatics Institute ( http://www.ebi.ac.uk/ ).

Article Title: iTRAQ-based Proteomic Analysis Unveils ACSL4 as a Novel Potential Regulator of Human Endometrial Receptivity.
Article Snippet: Competent endometrial receptivity is a prerequisite for successful embryo implantation.. Identification of novel key molecules involved in endometrial receptivity is essential to better interpret human implantation and improve pregnancy rates in assisted reproduction treatment.. Isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomics was performed to profile the proteomes of the prereceptive (luteinizing hormone [LH] + 2, n = 4) and receptive (LH + 7, n = 4) endometrial tissues.

Article Title: Hormone-mediated disassembly and inactivation of a plant E3 ubiquitin ligase complex.
Article Snippet: For the protocols of proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and mass spectrometry-based protein homology identification based on the TAIR10 genomic database, we referred to.45,56 For protein identification upon MS analysis the GPS explorer v3.6 (AB SCIEX) software package combined with search engine Mascot version 2.2 (Matrix Science) or Proteome Discoverer Software combined with search engine Sequest (Thermo) were used.



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